Bioinformatics Software Engineer
AccuraGen
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San Jose, CA
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Associate
Posted March 13, 2026
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Responsibilities
Commitments
Responsibilities
- Design, implement, and develop tests and documentation for established robust bioinformatics pipelines
- Optimize computational workflows for high-performance execution and reproducible data analysis
- Maintain, monitor, and improve pipeline automation to ensure smooth operational workflows
- Manage GitHub repositories, oversee version control, and streamline the software release process
- Develop and manage infrastructure on AWS to ensure scalability, reliability, and efficiency
- Collaborate with cross-functional teams to integrate bioinformatics solutions
- Proactively identify opportunities to enhance infrastructure efficiency and security
Commitments
Paid Time Off (Vacation, Sick & Public Holidays)
Not Met Priorities
What still needs stronger evidence
Requirements
- Bachelor's degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field. with at least 3+ years of working experience out of college
- Experience with bioinformatics workflow development and optimization, particularly using Nextflow
- Experience developing software following best practices, including comprehensive testing and clear documentation
- Proficiency in scripting languages (Python, Bash) and familiarity with container technologies (Docker, Kubernetes)
- Hands-on experience with AWS cloud computing services (EC2, S3, Batch, Lambda)
- Excellent communication and collaborative skills
Preferred Skills
- Familiarity with CI/CD practices
- Experience with infrastructure-as-code (Terraform, CloudFormation)
- Health Care Plan (Medical, Dental & Vision)
- Retirement Plan (401k, IRA)
Education
- (Not required) – Bachelor's degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field. with at least 3+ years of working experience out of college
- (Not required) – Health Care Plan (Medical, Dental & Vision)
- (Not required) – Retirement Plan (401k, IRA)
As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your contributions will directly impact innovative scientific discoveries and product development. You'll collaborate closely with scientists, engineers, and researchers, contributing your technical expertise to streamline processes, maintain automation, and drive our bioinformatics capabilities forward.
Responsibilities:
Design, implement, and develop tests and documentation for established robust bioinformatics pipelines
Optimize computational workflows for high-performance execution and reproducible data analysis
Maintain, monitor, and improve pipeline automation to ensure smooth operational workflows
Manage GitHub repositories, oversee version control, and streamline the software release process
Develop and manage infrastructure on AWS to ensure scalability, reliability, and efficiency
Collaborate with cross-functional teams to integrate bioinformatics solutions
Proactively identify opportunities to enhance infrastructure efficiency and security
Requirements
Qualifications:
Bachelor's degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field. with at least 3+ years of working experience out of college
Experience with bioinformatics workflow development and optimization, particularly using Nextflow
Experience developing software following best practices, including comprehensive testing and clear documentation
Proficiency in scripting languages (Python, Bash) and familiarity with container technologies (Docker, Kubernetes)
Hands-on experience with AWS cloud computing services (EC2, S3, Batch, Lambda)
Excellent communication and collaborative skills
Preferred Qualifications:
Familiarity with CI/CD practices
Experience with infrastructure-as-code (Terraform, CloudFormation)
Benefits
Health Care Plan (Medical, Dental & Vision)
Retirement Plan (401k, IRA)
Paid Time Off (Vacation, Sick & Public Holidays)
Responsibilities:
Design, implement, and develop tests and documentation for established robust bioinformatics pipelines
Optimize computational workflows for high-performance execution and reproducible data analysis
Maintain, monitor, and improve pipeline automation to ensure smooth operational workflows
Manage GitHub repositories, oversee version control, and streamline the software release process
Develop and manage infrastructure on AWS to ensure scalability, reliability, and efficiency
Collaborate with cross-functional teams to integrate bioinformatics solutions
Proactively identify opportunities to enhance infrastructure efficiency and security
Requirements
Qualifications:
Bachelor's degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field. with at least 3+ years of working experience out of college
Experience with bioinformatics workflow development and optimization, particularly using Nextflow
Experience developing software following best practices, including comprehensive testing and clear documentation
Proficiency in scripting languages (Python, Bash) and familiarity with container technologies (Docker, Kubernetes)
Hands-on experience with AWS cloud computing services (EC2, S3, Batch, Lambda)
Excellent communication and collaborative skills
Preferred Qualifications:
Familiarity with CI/CD practices
Experience with infrastructure-as-code (Terraform, CloudFormation)
Benefits
Health Care Plan (Medical, Dental & Vision)
Retirement Plan (401k, IRA)
Paid Time Off (Vacation, Sick & Public Holidays)